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Browse peer-reviewed publications demonstrating the application of BlackBox Bio technology across multiple research areas, including neuroscience, pain research, regenerative medicine, and others.

Cross-platform validation of treadmill-based and free-movement gait analysis following murine Achilles tendon hemi-transection
Behavioral PhenotypingGait AnalysisInjury & Recovery+2

Cross-platform validation of treadmill-based and free-movement gait analysis following murine Achilles tendon hemi-transection

University of California, Los Angeles (UCLA)
Muscles, Ligaments and Tendons JournalAugust 14, 2026

This study compares treadmill-based DigiGait with free-movement BlackBox gait analysis following Achilles tendon injury in mice. Using velocity-matched comparisons, BlackBox demonstrated greater sensitivity to early functional changes, detecting alterations in stance and swing duration through postoperative day 14.

Effects of Gabapentin on Ongoing Behaviors Displayed by Mice with Chemotherapy Neuropathy
Behavior AnalysisChemotherapy-Induced Peripheral Neuropathy (CIPN)Drug Discovery+3

Effects of Gabapentin on Ongoing Behaviors Displayed by Mice with Chemotherapy Neuropathy

Medical College of Wisconsin Department of Cell Biology, Neurobiology & Anatomy
bioRxivJuly 1, 2026

This study evaluated whether gabapentin alters spontaneous behaviors associated with chemotherapy-induced peripheral neuropathy (CIPN) in mice using the BlackBox automated behavioral analysis system. While paclitaxel treatment produced a reproducible behavioral phenotype, gabapentin affected several behaviors in both treated and control animals, suggesting these measures may not specifically reflect ongoing pain.

Acetylation of Axonal G3BP1 through ELP3 Accelerates Axon Regeneration
Behavior AnalysisMolecular BiologyNeuron Regeneration+2

Acetylation of Axonal G3BP1 through ELP3 Accelerates Axon Regeneration

Boston Children's Hospital & Harvard Medical School
bioRxivOctober 28, 2025

This study identifies acetylation of the axonal protein G3BP1 by the acetyltransferase ELP3 as a key mechanism that enhances axon regeneration following injury. The findings reveal a promising molecular target for promoting nerve repair and demonstrate the value of objective behavioral assessment for evaluating regenerative therapies.

Intranasal Oxytocin mRNA-LNP Can Promote Social Behavior and Reduce Pain
Behavior AnalysisNeurosciencePain Research+3

Intranasal Oxytocin mRNA-LNP Can Promote Social Behavior and Reduce Pain

The University of Sydney
bioRxivMarch 20, 2026

This study demonstrates that intranasal delivery of oxytocin mRNA encapsulated in lipid nanoparticles (mRNA-LNPs) enhances social behavior while reducing pain-related responses in preclinical models. The findings highlight a promising non-invasive therapeutic strategy and demonstrate the importance of objective behavioral phenotyping for evaluating treatment efficacy.

Neuropathic Pain Drives Time-Dependent Reorganization of Corticostriatal Circuits
Behavior AnalysisChronic PainNeural Circuits+2

Neuropathic Pain Drives Time-Dependent Reorganization of Corticostriatal Circuits

Rutgers, The State University of New Jersey
bioRxivOctober 7, 2025

This study investigates how neuropathic pain reshapes communication between the cortex and striatum over time. By combining advanced neuroscience techniques with objective behavioral analysis, the researchers demonstrate that chronic pain produces dynamic changes in neural circuitry that contribute to altered movement and behavior.

Blood Flow Restriction Therapy Stimulates Intercellular Mitochondria Transfer and Improves Muscle Regeneration and Shoulder Function in a Murine Rotator Cuff Injury Model
Behavior AnalysisFunctional RecoveryMuscle Regeneration+3

Blood Flow Restriction Therapy Stimulates Intercellular Mitochondria Transfer and Improves Muscle Regeneration and Shoulder Function in a Murine Rotator Cuff Injury Model

San Francisco Veterans Affairs Health Care System, University of California, San Francisco (UCSF), and collaborating institutions
The American Journal of Sports MedicineFebruary 20, 2026

This study demonstrates that blood flow restriction (BFR) therapy improves muscle regeneration and shoulder function following rotator cuff injury in mice. Using the BlackBox behavioral analysis system, researchers objectively measured improvements in gait and weight-bearing, highlighting the value of automated behavioral phenotyping for evaluating rehabilitation strategies.

Differential Modification of Ascending Spinal Outputs in Acute and Chronic Pain States
Behavior AnalysisChronic PainNeural Circuits+3

Differential Modification of Ascending Spinal Outputs in Acute and Chronic Pain States

F.M. Kirby Neurobiology Center, Boston Children's Hospital & Harvard Medical School
NeuronApril 16, 2025

This study reveals how ascending spinal pathways are differentially modified during acute and chronic pain, providing new insight into how pain signals are processed and transmitted to the brain. The findings improve our understanding of pain neurobiology and support the development of more targeted therapeutic strategies.

Deep Behavioral Phenotyping Tracks Functional Recovery Following Tibia Fracture in Mice
Behavior AnalysisFunctional RecoveryMachine Learning+3

Deep Behavioral Phenotyping Tracks Functional Recovery Following Tibia Fracture in Mice

Steadman Philippon Research Institute (plus collaborating institutions)
bioRxivMay 9, 2025

This study demonstrates how deep behavioral phenotyping can objectively measure functional recovery following tibia fracture in mice. Using automated behavioral analysis, researchers identified subtle changes in movement and recovery that traditional assessment methods may overlook, providing a more comprehensive picture of fracture healing.

ARBEL: A Machine Learning Tool with Light-Based Image Analysis for Automatic Classification of 3D Pain Behaviors
Artificial IntelligenceBehavior AnalysisMachine Learning+2

ARBEL: A Machine Learning Tool with Light-Based Image Analysis for Automatic Classification of 3D Pain Behaviors

F. M. Kirby Neurobiology Center, Boston Children's Hospital & Harvard Medical School
bioRxivDecember 2, 2024

ARBEL is a machine learning platform that automatically classifies complex three-dimensional pain behaviors using light-based imaging and computer vision. By eliminating subjective manual scoring, the system enables rapid, objective, and reproducible behavioral assessment in preclinical pain research.

Non-muscle Myosin II Inhibition at the Site of Axon Injury Increases Axon Regeneration
Behavior AnalysisDrug DiscoveryMachine Learning+3

Non-muscle Myosin II Inhibition at the Site of Axon Injury Increases Axon Regeneration

Boston Children's Hospital & Harvard Medical School Collaborating with the University of California, Los Angeles (UCLA)
Nature CommunicationsMarch 27, 2025

This study demonstrates that inhibiting non-muscle myosin II directly at the site of nerve injury significantly enhances axon regeneration. The findings provide new insight into mechanisms of neural repair and highlight the value of objective behavioral analysis for evaluating recovery following nervous system injury.

A Bad Break: Mechanisms and Assessment of Acute and Chronic Pain After Bone Fracture
Behavior AnalysisBone FractureDrug Discovery+3

A Bad Break: Mechanisms and Assessment of Acute and Chronic Pain After Bone Fracture

Steadman Philippon Research Institute In collaboration with the University of California, San Francisco (UCSF) and international research partners.
PAIN (International Association for the Study of Pain)May 21, 2025

This comprehensive review examines the biological mechanisms underlying acute and chronic pain following bone fracture while evaluating current methods used to measure fracture pain in both clinical and preclinical research. The authors highlight opportunities for more objective, quantitative behavioral assessment to improve the development of future pain therapies.

Unbiased Quantification of Persistent Postural and Motor Deficits Following Spinal Cord Injury in Mice
Behavior AnalysisMachine LearningMotor Function+3

Unbiased Quantification of Persistent Postural and Motor Deficits Following Spinal Cord Injury in Mice

University of Texas Southwestern Medical Center (Department of Neuroscience and collaborating laboratories)
bioRxiv / PLOS ONEMay 28, 2025

This study demonstrates how the BlackBox system objectively quantifies persistent postural and motor impairments following spinal cord injury in mice. By combining machine learning–based pose estimation with automated weight-bearing analysis, researchers identified long-term behavioral deficits that traditional scoring methods failed to detect.

Automated Preclinical Detection of Mechanical Pain Hypersensitivity and Analgesia
Behavior AnalysisMachine LearningPain Research

Automated Preclinical Detection of Mechanical Pain Hypersensitivity and Analgesia

Boston Children's Hospital, F.M. Kirby Neurobiology Center & Harvard Medical School
PAIN (International Association for the Study of Pain)December 1, 2022

Researchers developed an automated machine learning platform capable of objectively detecting pain-related behaviors in freely moving rodents. The system accurately measured mechanical pain hypersensitivity and distinguished effective analgesia from sedation, demonstrating a powerful new approach for preclinical pain research.

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